Pumpkin Cream Cheese Swirl Muffins always take me straight to crisp mornings and little hands reaching for warm treats after school, and that cozy rhythm never gets old with three kids racing through the kitchen for seconds of Pumpkin Cream Cheese Swirl Muffins and giggling over who got the biggest swirl, because food is how we slow down and connect, and these Pumpkin Cream Cheese Swirl Muffins make the house smell like fall, feel like a hug, and taste like comfort in every bite, simple to mix, easy to bake, and perfect for sharing around the table.
Why You’ll Love This Recipe:
Pumpkin Cream Cheese Swirl Muffins are ultra-moist, warmly spiced, and crowned with a tangy cheesecake swirl that bakes into a gorgeous marbled top for bakery-style looks at home, fast. The batter uses pumpkin puree and oil for softness, cinnamon and pumpkin spice for warmth, and an easy swirl that feels special without extra effort. They’re freezer-friendly, kid-approved, and just sweet enough for breakfast, snack time, or cozy desserts with coffee.
Ingredients – Pumpkin Cream Cheese Swirl Muffins:

- For the muffins: pumpkin puree, granulated sugar, brown sugar, eggs, neutral oil, vanilla, all-purpose flour, baking soda, baking powder, salt, cinnamon, pumpkin pie spice, and optional turbinado sugar.
- For the cream cheese swirl: block cream cheese, granulated sugar or powdered sugar, egg yolk, and vanilla extract.
- Optional mix-ins: mini chocolate chips, chopped pecans or walnuts, or a cinnamon-sugar sprinkle for added texture.
| Pan & Yield | Bake Time & Temp |
|---|---|
| 12-cup muffin pan, liners or greased wells | 18–22 minutes at 375°F (reduce to 350°F if browning quickly) |
Substitutions & Variations – Pumpkin Cream Cheese Swirl Muffins:
- Dairy-free: use dairy-free cream cheese and plant milk if thinning the swirl; choose oil instead of butter to keep muffins tender.
- Gluten-free: swap a 1:1 gluten-free baking flour with xanthan gum for reliable structure and moist crumbs.
- Sweetness tweaks: use all brown sugar for deeper caramel notes or half-and-half with white sugar for a lighter crumb.
- Spice it up: add extra cinnamon, nutmeg, or a pinch of clove for bolder fall flavor; or swirl in a teaspoon of maple syrup to the cream cheese for nuance.
- Add-ins: fold in mini chips, cranberries, or toasted pecans; top with coarse sugar or a streusel for crunch.
Step-by-Step Instructions – Pumpkin Cream Cheese Swirl Muffins:

- Prep: Heat the oven to 375°F and line a 12-cup pan; bring cream cheese and eggs to room temp for smooth swirls and tender crumbs.
- Make the batter: Whisk dry ingredients (flour, baking soda/powder, salt, cinnamon, pumpkin spice). In another bowl, whisk pumpkin puree, sugars, eggs, oil, and vanilla, then fold in dry just until combined.
- Mix the swirl: Beat cream cheese with sugar, egg yolk, and vanilla until silky; transfer to a piping bag or zip bag for easy drops.
- Fill tins: Portion batter into cups about 3/4 full; dot 1 tablespoon cream cheese on top and use a toothpick to create a gentle swirl.
- Bake: 18–20 minutes at 375°F, or try 425°F for 5 minutes then 350°F for 15–18 minutes for taller domes; test with a toothpick in the muffin portion.
- Cool: Rest 5–10 minutes in the pan, then move to a rack; serve warm or at room temp for the best texture.
Pro Tips for Success – Pumpkin Cream Cheese Swirl Muffins:

- Weigh flour for accuracy; too much leads to dry muffins and limits rise.
- Use canned pumpkin puree, not pumpkin pie filling, for controlled sweetness and spice.
- Don’t overmix; stir just until combined to avoid tough crumbs.
- For defined marbling, pipe 5–6 small drops of cream cheese and swirl lightly instead of heavy stirring.
- For high domes, start hot at 425°F for 5 minutes, then lower to 350°F to finish baking.
Storage & Reheating Tips – Pumpkin Cream Cheese Swirl Muffins:
- Because of the cream cheese, refrigerate the same day once cooled; keep in an airtight container up to 5 days.
- To freeze, cool completely, wrap well, and store up to 3 months; thaw overnight in the fridge for best texture.
- Reheat chilled muffins 10–20 seconds in the microwave or let sit 15 minutes at room temperature before serving.
What to Serve With This Recipe – Pumpkin Cream Cheese Swirl Muffins:

- Hot drinks: pair with coffee, chai, or a cinnamon latte for cozy balance to the tangy swirl and warm spices in Pumpkin Cream Cheese Swirl Muffins.
- Brunch sides: serve with fruit salad, crisp bacon, or Greek yogurt and honey for a complete spread that highlights Pumpkin Cream Cheese Swirl Muffins.
- Toppings: dust with cinnamon sugar or add a drizzle of maple glaze to accent pumpkin spice and the cheesecake notes in Pumpkin Cream Cheese Swirl Muffins.
FAQs – Pumpkin Cream Cheese Swirl Muffins:
- Can fresh pumpkin be used instead of canned? Yes, but drain well; canned puree gives consistent moisture and rise for Pumpkin Cream Cheese Swirl Muffins.
- Why did the swirl sink? Overly thin swirl or underfilled cups can cause sinking; use room-temp block cream cheese and dollop on top for defined marbling.
- How to get tall domes? Start hot at 425°F for 5 minutes, then bake at 350°F until done for higher lift in Pumpkin Cream Cheese Swirl Muffins.
- Do they need refrigeration? Yes; the cream cheese requires airtight refrigeration after cooling for Pumpkin Cream Cheese Swirl Muffins.
- Can these be made gluten-free? Use a 1:1 gluten-free flour blend with xanthan gum for structure in Pumpkin Cream Cheese Swirl Muffins.
Nutrition Information (per serving) :
- Expect 140–280 calories per muffin depending on sugar, oil, and cream cheese amounts in Pumpkin Cream Cheese Swirl Muffins.
- Typical macros: 30–41 g carbs, 3–11 g fat, 2–3 g protein, and 1 g fiber per muffin in Pumpkin Cream Cheese Swirl Muffins.
- Sodium varies by leavening and salt; many recipes range 150–190 mg per muffin for Pumpkin Cream Cheese Swirl Muffins.
Pumpkin Cream Cheese Swirl Muffins
- Total Time: 35 minutes
- Yield: 12 muffins 1x
Description
Pumpkin Cream Cheese Swirl Muffins are ultra-moist, warmly spiced, and crowned with a tangy cheesecake swirl that bakes into a gorgeous marbled top for bakery-style looks at home. Perfect for cozy mornings, snacks, or desserts.
Ingredients
For the muffins:
1 cup pumpkin puree
1/2 cup granulated sugar
1/2 cup brown sugar
2 large eggs
1/2 cup neutral oil
1 tsp vanilla extract
1 3/4 cups all-purpose flour
1 tsp baking soda
1/2 tsp baking powder
1/2 tsp salt
1 tsp cinnamon
1 tsp pumpkin pie spice
Optional: turbinado sugar for topping
For the cream cheese swirl:
8 oz block cream cheese, softened
3 tbsp granulated sugar (or powdered sugar)
1 egg yolk
1/2 tsp vanilla extract
Optional mix-ins:
Mini chocolate chips
Chopped pecans or walnuts
Cinnamon-sugar sprinkle
Instructions
1. Preheat oven to 375°F and line a 12-cup muffin pan with liners or grease wells.
2. In one bowl, whisk together flour, baking soda, baking powder, salt, cinnamon, and pumpkin pie spice.
3. In another bowl, whisk pumpkin puree, sugars, eggs, oil, and vanilla until smooth.
4. Fold dry ingredients into wet just until combined; do not overmix.
5. Beat cream cheese with sugar, egg yolk, and vanilla until smooth.
6. Fill muffin cups about 3/4 full with batter.
7. Drop about 1 tablespoon of cream cheese mixture on top of each muffin and swirl gently with a toothpick.
8. Bake 18–20 minutes at 375°F, or use 425°F for 5 minutes then 350°F for 15–18 minutes for taller domes.
9. Cool muffins 5–10 minutes in the pan, then transfer to a rack.
10. Serve warm or at room temperature.
Notes
Use canned pumpkin puree, not pumpkin pie filling.
Weigh flour for accuracy to avoid dry muffins.
Don’t overmix the batter to keep muffins tender.
Pipe several small drops of cream cheese for more defined swirls.
For high domes, start at 425°F for 5 minutes then lower temperature.
Refrigerate muffins after cooling due to cream cheese filling.
Freeze up to 3 months, wrapped well.
Reheat chilled muffins 10–20 seconds in the microwave or let sit 15 minutes at room temp before serving.
- Prep Time: 15 minutes
- Cook Time: 20 minutes
- Category: Breakfast, Snack, Dessert
- Method: Baking
- Cuisine: American
Nutrition
- Serving Size: 1 muffin
- Calories: 210
- Sugar: 18 g
- Sodium: 170 mg
- Fat: 9 g
- Saturated Fat: 3 g
- Unsaturated Fat: 5 g
- Trans Fat: 0 g
- Carbohydrates: 31 g
- Fiber: 1 g
- Protein: 3 g
- Cholesterol: 35 mg